PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12112g02002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 479aa    MW: 53161.8 Da    PI: 5.1602
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12112g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-35211112101
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F
  Niben101Scf12112g02002.1  21 FLLKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEF 96 
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkk 101
                                k++k+ll++i+r+k
  Niben101Scf12112g02002.1  97 VKDQKHLLKNIHRRK 111
                               *************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.36E-3617110IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-3817110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-6117110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-202144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-205971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDVISATAAA AGGGGGGPAP FLLKTYEMVD DSQTDDIVSW TPTGHSFVVW NPPEFARILL  60
PTYFKHNNFS SFIRQLNTYG FRKIDPERWE FANEEFVKDQ KHLLKNIHRR KPIHSHSHPP  120
GSTVDPERAA FEEEIDKLSR EKSGLEANVL RFRQQQSAAK LQLEEMTERV GGIEQRQESL  180
LAFVEKAVLN PDFVERLAQK LESMDISAFS KKRRLPQVDS SQPVQENMSV DNHSSSRVEF  240
GNLCNQDFSN KLRLELSPAV SDINVVSCST QSSNEDGGSP HRRISECWSR EVQLRTGGVI  300
YTPEAIELSD TGTSFILKMD SSLPLAASNV ESSRLHSLPQ SLISNEEVDG HISCQLNLSL  360
ASCLSQVDKN QHSSRMAQVG QGMSKHSESQ SDANGKNPPN DDKSLPPSHD ATGNKQGAAT  420
TPVRVNDVFW EQFLTERPGC SDNEEASSSF KGNSYDEQDD MESIQGVASN TRKVEHLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-231111016129Heat shock factor protein 1
5d5v_B3e-231111016129Heat shock factor protein 1
5d5v_D3e-231111016129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783144.10.0PREDICTED: heat stress transcription factor A-5
RefseqXP_016475994.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-164HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLM1A0B90.0M1A0B9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000118710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94612125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-165HSF family protein